Optimise imports. Cleanup done using PyCharm Community Edition.

pcigale/analysis_modules/__init__.py

@@ -5,6 +5,7 @@
 # Author: Yannick Roehlly & Denis Burgarella
 
 from importlib import import_module
+
 import numpy as np
 from astropy.table import Column
 

pcigale/analysis_modules/pdf_analysis/__init__.py

@@ -42,7 +42,6 @@ from .workers import init_analysis as init_worker_analysis
 from .workers import analysis as worker_analysis
 from ..utils import ParametersHandler, backup_dir
 
-from ..utils import OUT_DIR
 
 # Tolerance threshold under which any flux or error is considered as 0.
 TOLERANCE = 1e-12

pcigale/analysis_modules/pdf_analysis/utils.py

@@ -9,7 +9,6 @@ from astropy import log
 from astropy.table import Table, Column
 import numpy as np
 from scipy.special import erf
-from scipy.stats import scoreatpercentile
 
 from ..utils import OUT_DIR
 

pcigale/analysis_modules/savefluxes/__init__.py

@@ -28,6 +28,7 @@ from ...warehouse import SedWarehouse
 from .workers import init_fluxes as init_worker_fluxes
 from .workers import fluxes as worker_fluxes
 
+
 # Limit the redshift to this number of decimals
 REDSHIFT_DECIMALS = 2
 

pcigale/analysis_modules/savefluxes/workers.py

@@ -10,7 +10,6 @@ import time
 import numpy as np
 
 from ...warehouse import SedWarehouse
-
 from ..utils import OUT_DIR
 
 

pcigale/creation_modules/bc03.py

@@ -13,7 +13,9 @@ Populations.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 from ..data import Database
 

pcigale/creation_modules/casey2012.py

@@ -13,8 +13,10 @@ This module implements the Casey (2012) infra-red models.
 """
 
 from collections import OrderedDict
+
 import numpy as np
 import scipy.constants as cst
+
 from . import CreationModule
 
 

pcigale/creation_modules/dale2014.py

@@ -12,6 +12,7 @@ This module implements the Dale (2014) infra-red models.
 """
 
 from collections import OrderedDict
+
 from pcigale.data import Database
 from . import CreationModule
 

pcigale/creation_modules/dl2007.py

@@ -13,7 +13,9 @@ This module implements the Draine and Li (2007) infra-red models.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from pcigale.data import Database
 from . import CreationModule
 

pcigale/creation_modules/dl2014.py

@@ -13,7 +13,9 @@ This module implements the updated Draine and Li (2007) infrared models.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from pcigale.data import Database
 from . import CreationModule
 

pcigale/creation_modules/dustatt_calzleit.py

@@ -14,7 +14,9 @@ attenuation formulae, adding an UV-bump and a power law.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 
 

pcigale/creation_modules/dustatt_powerlaw.py

@@ -14,7 +14,9 @@ in Charlot and Fall (2000) with a UV bump added.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 
 

pcigale/creation_modules/fritz2006.py

@@ -11,7 +11,9 @@ This module implements the Fritz et al. (2006) models.
 
 """
 from collections import OrderedDict
+
 import numpy as np
+
 from pcigale.data import Database
 from . import CreationModule
 

pcigale/creation_modules/loadfile.py

@@ -11,8 +11,8 @@ This module reads a SED spectrum from a file.
 
 """
 
-from astropy.table import Table
 from collections import OrderedDict
+
 from ..utils import read_table
 from . import CreationModule
 

pcigale/creation_modules/m2005.py

@@ -12,7 +12,9 @@ This module implements the Maraston (2005) Single Stellar Populations.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 from ..data import Database
 

pcigale/creation_modules/mbb.py

@@ -17,8 +17,10 @@ wavelength range.
 """
 
 from collections import OrderedDict
+
 import numpy as np
 import scipy.constants as cst
+
 from . import CreationModule
 
 

pcigale/creation_modules/nebular.py

@@ -4,9 +4,11 @@
 # Author: Médéric Boquien <mboquien@ast.cam.ac.uk>
 
 from collections import OrderedDict
+
 import numpy as np
-from pcigale.data import Database
 import scipy.constants as cst
+
+from pcigale.data import Database
 from . import CreationModule
 
 

pcigale/creation_modules/param.py

@@ -16,7 +16,9 @@ for all the physical processes at play to build the received total emission.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 
 

pcigale/creation_modules/radio.py

@@ -18,8 +18,10 @@ This module implements the radio emission of galaxies, taking into account only
 """
 
 from collections import OrderedDict
+
 import numpy as np
 import scipy.constants as cst
+
 from . import CreationModule
 
 

pcigale/creation_modules/redshifting.py

@@ -21,9 +21,9 @@ is changed, this module may need to be adapted.
 import numpy as np
 from scipy.constants import parsec
 from scipy.misc import factorial
+from astropy.cosmology import WMAP7 as cosmology
 
 from ..creation_modules import CreationModule
-from astropy.cosmology import WMAP7 as cosmology
 
 
 def igm_transmission(wavelength, redshift):

pcigale/creation_modules/sfh2exp.py

@@ -13,9 +13,12 @@ decreasing exponentials.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 
+
 # Time lapse used in the age grid in Myr. If should be consistent with the
 # time lapse in the SSP modules.
 AGE_LAPSE = 1

pcigale/creation_modules/sfh_buat08.py

@@ -22,9 +22,12 @@ and interpolate the values of a, b and c.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 
+
 # Time lapse used in the age grid in Myr. If should be consistent with the
 # time lapse in the SSP modules.
 AGE_LAPSE = 1

pcigale/creation_modules/sfh_quenching.py

@@ -15,9 +15,12 @@ constant.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 
+
 # Time lapse used in the age grid in Myr. If should be consistent with the
 # time lapse in the SSP modules.
 AGE_LAPSE = 1

pcigale/creation_modules/sfhdelayed.py

@@ -14,9 +14,12 @@ rise of the SFR up to a maximum, followed by an exponential decrease.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 
+
 # Time lapse used in the age grid in Myr. If should be consistent with the
 # time lapse in the SSP modules.
 AGE_LAPSE = 1

pcigale/creation_modules/sfhfromfile.py

@@ -12,7 +12,9 @@ This module reads the star formation history in a file.
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from ..utils import read_table
 from . import CreationModule
 

pcigale/creation_modules/sfhperiodic.py

@@ -15,7 +15,9 @@ decaying exponential, or "delayed".
 """
 
 from collections import OrderedDict
+
 import numpy as np
+
 from . import CreationModule
 
 

pcigale/data/__init__.py

@@ -20,6 +20,7 @@ from sqlalchemy import create_engine, exc, Column, String,  Float, PickleType
 from sqlalchemy.ext.declarative import declarative_base
 from sqlalchemy.orm import class_mapper, sessionmaker
 import numpy as np
+
 from .filters import Filter
 from .m2005 import M2005
 from .bc03 import BC03
@@ -30,7 +31,6 @@ from .fritz2006 import Fritz2006
 from .nebular_continuum import NebularContinuum
 from .nebular_lines import NebularLines
 
-
 DATABASE_FILE = pkg_resources.resource_filename(__name__, 'data.db')
 
 ENGINE = create_engine('sqlite:///' + DATABASE_FILE, echo=False)

pcigale/sed/__init__.py

@@ -31,12 +31,14 @@ Such SED is characterised by:
 """
 
 import numpy as np
+from scipy.constants import c, parsec
+
 from . import utils
 from .io.vo import save_sed_to_vo
-from scipy.constants import c, parsec
 from ..data import Database
 
 
+
 # Time lapse used to compute the average star formation rate. We use a
 # constant to keep it easily changeable for advanced user while limiting the
 # number of parameters. The value is in Myr.

pcigale/session/configuration.py

@@ -3,14 +3,16 @@
 # Licensed under the CeCILL-v2 licence - see Licence_CeCILL_V2-en.txt
 # Author: Yannick Roehlly
 
-import configobj
-import pkg_resources
 import pkgutil
 import collections
 import multiprocessing as mp
-import numpy as np
-from glob import glob  # To allow the use of glob() in "eval..."
 from textwrap import wrap
+
+import configobj
+from glob import glob  # To allow the use of glob() in "eval..."
+import pkg_resources
+import numpy as np
+
 from ..data import Database
 from ..utils import read_table
 from .. import creation_modules

pcigale/warehouse/__init__.py

@@ -4,6 +4,7 @@
 # Author: Yannick Roehlly
 
 import marshal
+
 from ..sed import SED
 from .. import creation_modules
 

pcigale_filters/__init__.py

@@ -4,13 +4,15 @@
 # Author: Médéric Boquien
 
 import argparse
+import multiprocessing as mp
+import sys
+
 from astropy.table import Table, Column
 import astropy.units as u
 import matplotlib.pyplot as plt
-import multiprocessing as mp
 import numpy as np
+
 from pcigale.data import Database, Filter
-import sys
 
 __version__ = "0.1-alpha"
 

pcigale_plots/__init__.py

@@ -7,17 +7,19 @@
 # Author: Yannick Roehlly, Médéric Boquien & Denis Burgarella
 
 import argparse
-from astropy.table import Table
 from itertools import product, repeat
 from collections import OrderedDict
+
+from astropy.table import Table
 import matplotlib
+
 matplotlib.use('Agg')
 import matplotlib.pyplot as plt
 import multiprocessing as mp
 import numpy as np
 import os
 import pkg_resources
-from scipy.constants import c, parsec
+from scipy.constants import c
 from pcigale.data import Database
 from pcigale.utils import read_table
 from pcigale.session.configuration import Configuration