Skip to content

GitLab

Commit a1b607eb authored by LAMBERT Jean-charles's avatar LAMBERT Jean-charles
Browse files

improve c2dplot, warning on py_unstools import missing

parent 2ca5dafa
Hide whitespace changes
Inline Side-by-side
py/mains/script_analysis.txt
View file @ a1b607eb
......@@ -2,15 +2,18 @@
"""
This script is called by external python script through execfile() call
"""
import matplotlib
matplotlib.use('Agg') # for offscreen rendering
from simulations.ccod import *
from simulations.ccom import *
from simulations.crectify import *
from simulations.cmovie import *
run_cod=1
run_com=1
run_rectify=1
run_movie=1
run_cod=0
run_com=0
run_rectify=0
run_movie=0
run_2dplot=1
##
## COD
##
......@@ -62,7 +65,22 @@ if run_movie:
movie.smartAnalysis()
##
## MOVIE2
##
if run_2dplot:
data.lock_id=4
data.movie_dir="ANALYSIS/"+data.simname+"/movie2"
#data.movie_select syntax: component # propertie # percen # newradius # extdir
data.movie_select="gas,stars,halo"
mergers="@"+data.sim_info['name']
cmap="gas:jet,stars:Paired,halo:Accent"
if data.first:
movie=C2dplot(analysis=data,verbose_debug=True) # initialyze MOVIE analysis
movie.smartAnalysis(component=data.movie_select,xrange=20.,mergers=mergers,cmap=cmap,contour=False,noxz=False)
movie.smartAnalysis(component=data.movie_select,xrange=20.,mergers=mergers,cmap=cmap,contour=True,noxz=False)
##
data.first=False #MANDATORY
......
py/mains/uns_2dplot.py
View file @ a1b607eb
......@@ -5,10 +5,8 @@ import numpy as np
import os,time
import sys
import argparse,textwrap
sys.path=['/home/jcl/works/GIT/uns_projects/py/modules/','/home/jcl/works/GIT/uns_projects/py/modules/simulations']+sys.path
from simulations.c2dplot import *
from simulations.csnapshot import *
#sys.path=['/home/jcl/works/GIT/uns_projects/py/modules/','/home/jcl/works/GIT/uns_projects/py/modules/simulations']+sys.path
#from IPython import embed
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# commandLine, parse the command line
......@@ -21,14 +19,14 @@ def commandLine():
parser.add_argument('snapshot', help="uns input snapshot",default=None)
parser.add_argument('component', help="selected component",default=None)
parser.add_argument('--out', help="if blank display on screen, else on given file ",default="",type=str)
parser.add_argument('--range', help="plot range (X or -A:B) ",default=35,type=str)
parser.add_argument('--mergers', help="file to center, or @sim to get file automatically ",default=None,type=str)
parser.add_argument('--range', help="plot range",default=20,type=str)
parser.add_argument('--mergers', help="file to re-center, or @sim (ex; @mdf648) to get file automatically from simulation ",default="",type=str)
parser.add_argument('--sigma', help="gaussian sigma ",default=6.,type=float)
parser.add_argument('--psort', help="sort particles according to properties",default=0,type=int)
parser.add_argument('--prop', help="properties to plot (age,rho)",default="",type=str)
parser.add_argument('--pfname', help="print filename (1:True, 0:False)",default=1,type=int)
parser.add_argument('--cb', help="display color bar (1:True, 0:False)",default=0,type=int)
parser.add_argument('--cmap', help="color map (see mathplotlib colormap)",default="jet")
parser.add_argument('--noxz',help='no XZ projection',dest="noxz", action="store_true", default=False)
parser.add_argument('--contour',help='toggle contour display',dest="contour", action="store_true", default=False)
parser.add_argument('--nc',help='#levels contour',default=20,type=int)
parser.add_argument('--cpt', help="index of the image (out.cpt.jpg)",default=0,type=int)
parser.add_argument('--cmap', help="color map (see mathplotlib colormap)",default="gas:jet,stars:Paired,halo:Accent")
parser.add_argument('--verbose',help='verbose mode',dest="verbose", action="store_true", default=False)
# parse
......@@ -40,13 +38,24 @@ def commandLine():
# -----------------------------------------------------
# process, is the core function
def process(args):
# select matplotlib backend
if args.out!= "": # non interactive
import matplotlib
matplotlib.use('Agg')
# we import this modules here because
# matplotlib.use() must be done before importing matplotlib.pyplot
import simulations.c2dplot as c2d
import simulations.csnapshot as csnap
try:
cpt=0
uns=CSnapshot(args.snapshot,args.component,verbose_debug=args.verbose)
cpt = args.cpt
uns=csnap.CSnapshot(args.snapshot,args.component,verbose_debug=args.verbose)
#ok=uns.nextFrame("")
while(uns.nextFrame("")):
c=C2dplot(verbose_debug=args.verbose)
c.fullProcess(uns=uns,out=args.out,component=args.component,xrange=int(args.range),sigma=args.sigma, mergers=args.mergers,cmap=args.cmap,cpt=cpt)
c=c2d.C2dplot(verbose_debug=args.verbose)
c.fullProcess(uns=uns,out=args.out,component=args.component,xrange=int(args.range),sigma=args.sigma,
mergers=args.mergers,cmap=args.cmap,cpt=cpt,noxz=args.noxz, contour=args.contour, nc=args.nc)
cpt =cpt+1
# else:
# print ("[%s] is not a UNS snapshot ..."%(simname))
......
py/modules/simulations/c2dpgplot.py
View file @ a1b607eb
......@@ -2,8 +2,12 @@
from __future__ import print_function
from uns_simu import *
from csnapshot import *
import sys
try:
import py_unstools # rectify swig
except ImportError:
print("WARNING !!!, failed to import module [py_unstools]",file=sys.stderr)
import py_unstools # rectify swig
from multiprocessing import Lock
import time
......
py/modules/simulations/ccod.py
View file @ a1b607eb
......@@ -368,154 +368,6 @@ class CCod:
if (ss==comp+"_%d"%(i)):
return True,comp,i-1
return False,None,None
#
# ----
#
# try to read model_param.txt file in SIMULATION directory and fill up an array with #particles per galaxy/halo
def __getHaloParticlesNumber(self,model_param="model_param.txt"):
ok=False
infile=self.__r['dir']+"/"+model_param
if os.path.exists(infile):
print("Model file exist :",infile,file=sys.stderr)
fh = open(infile)
for line in fh:
line=line.strip()
if line.find('_halo_nbody')>=0 :
ok=True
sline=line.split()
ind=int(((sline[0].split("_"))[0].split("l"))[1])
print (sline,ind,type(self.__halo_part),file=sys.stderr)
self.__halo_part[ind-1] = int(sline[1])
self.__halo_part=self.__halo_part[np.where(self.__halo_part>0)]
print (self.__halo_part,self.__halo_part.size,file=sys.stderr)
return ok
#
# ----
# Compute mering time between two halos galaxy
def computeMergingTime(self,halo_1=None,halo_2=None,simname=None,outdir="./",txtfile="merging_time.txt",pngfile="merging_time.png",dmax=1.0,seger=False, plot=True):
merging_time=-1
if halo_1 is None: # we are in a simulation
if self.__cod_file_base is None: # no cod computation ?
return 0
else :
if not seger:
c_halo_1=self.__cod_file_base+"/"+self.simname+".halo_1.cod"
c_halo_2=self.__cod_file_base+"/"+self.simname+".halo_2.cod"
outdir=self.__cod_file_base
simname=self.simname
else: # seger
c_halo_1=self.__cod_file_base+"/../seger.analysis/g1g2_center/g1_halo.cod0.01.txt"
c_halo_2=self.__cod_file_base+"/../seger.analysis/g1g2_center/g2_halo.cod0.01.txt"
outdir=None
simname=self.simname+"(seger)"
else:
c_halo_1=halo_1
c_halo_2=halo_2
simname="None"
if self.__vdebug:
print("c_halo_1 [%s]\nc_halo_2 [%s]\n"%(c_halo_1,c_halo_2),file=sys.stderr)
if os.path.isfile(c_halo_1) and os.path.isfile(c_halo_2):
# load files in numpy arrays
data1=np.loadtxt(c_halo_1,dtype=np.float32)
data2=np.loadtxt(c_halo_2,dtype=np.float32)
# sort according time
time1_sort=data1[:,0].argsort()
time2_sort=data2[:,0].argsort()
n = min(time1_sort.size,time2_sort.size) # get minimum in case of #lines
time1_sort = time1_sort[0:n]
time2_sort = time2_sort[0:n]
# compute distance
x2=(data1[time1_sort][:,1]-data2[time2_sort][:,1])**2
y2=(data1[time1_sort][:,2]-data2[time2_sort][:,2])**2
z2=(data1[time1_sort][:,3]-data2[time2_sort][:,3])**2
distance=np.sqrt(x2+y2+z2)
# select times only when distance > dmax
a=(distance>=dmax)
x=np.where(a)
if x[0].size==0:
print("\n\n\n NO MERGING TIME FOUND \n\n\n",file=sys.stderr)
return -1
id_merge = x[0][-1]+1 # id matching to merging time
merging_time=data1[id_merge][0]
print("Merging time =",merging_time,"\nmerging distance =",
distance[id_merge],"\nmax distance from merging=",
distance[data1[time1_sort][:,0]>merging_time].max(),file=sys.stderr)
if txtfile is not None and outdir is not None :
m_txt=outdir+"/"+txtfile
print("Saving txt ",m_txt,file=sys.stderr)
f=open(m_txt,"w")
f.write(str(merging_time)+"\n")
f.close()
if plot:
# plot
# first plot: plot distance between 2 halos on whole simulation
plt.subplot(211)
plt.plot(data1[time1_sort][:,0],distance[time1_sort],'b')
plt.axvline(merging_time,color='g',dashes=(10,3),label="merging")
plt.title('Distance between 2 Halos : '+simname)
plt.xlabel('Gyears')
plt.ylabel('Kpc')
ax = plt.axis() # get axis coordinates
plt.text(merging_time+0.01,(ax[3]-ax[2])/2,"%.3f"%(merging_time)) # print merging time
#plt.show()
# second plot: plot distance between 2 halos from merging time
plt.subplot(212)
#plt.title('Distance between 2 Halos')
plt.xlabel('Gyears')
plt.ylabel('Kpc')
select_t=(data1[time1_sort][:,0]>merging_time)
plt.plot(data1[time1_sort[select_t]][:,0],distance[time1_sort[select_t]],'b')
plt.axvline(merging_time,color='g',dashes=(10,3))
ax = plt.axis() # get axis coordinates
plt.text(merging_time+0.01,(ax[3]-ax[2])/2,"%.3f"%(merging_time)) # print merging time
plt.tight_layout()
if pngfile is not None and outdir is not None:
img_png=outdir+"/"+pngfile
print("Saving plot :",img_png,file=sys.stderr)
plt.savefig(img_png)
else:
plt.show()
return merging_time
#
#
#
def getMergingTime(self, txtfile="merging_time.txt"):
"""
Get merging time from file
"""
ok=False
mtime=-1
if self.__cod_file_base is None: # no cod computation ?
return ok,-1
mtf=self.__cod_file_base+"/"+txtfile
if os.path.isfile(mtf):
f=open(mtf,"r")
try:
mtime=float(f.readline())
ok=True
except EOFError:
print("Unable to read file <%s>\n"%(mtf),file=sys.stderr)
pass
print("File <%s> does not exist\n"%(mtf),file=sys.stderr)
return ok,mtime
#
# isMultipleHalo
#
......@@ -817,7 +669,8 @@ class CCod:
ok=False
infile=self.__r['dir']+"/"+model_param
if os.path.exists(infile):
print("Model file exist :",infile,file=sys.stderr)
if self.__vdebug:
print("Model file exist :",infile,file=sys.stderr)
fh = open(infile)
for line in fh:
line=line.strip()
......@@ -825,12 +678,13 @@ class CCod:
ok=True
sline=line.split()
ind=int(((sline[0].split("_"))[0].split("l"))[1])
print (sline,ind,type(self.__halo_part),file=sys.stderr)
if self.__vdebug:
print (sline,ind,type(self.__halo_part),file=sys.stderr)
self.__halo_part[ind-1] = int(sline[1])
self.__halo_part=self.__halo_part[np.where(self.__halo_part>0)]
print (self.__halo_part,self.__halo_part.size,file=sys.stderr)
if self.__vdebug:
print (self.__halo_part,self.__halo_part.size,file=sys.stderr)
return ok
......
py/modules/simulations/cfalcon.py
View file @ a1b607eb
#!/usr/bin/python
from __future__ import print_function
import py_unstools
import numpy as np
import sys
try:
import py_unstools
except ImportError:
print("WARNING !!!, failed to import module [py_unstools]",file=sys.stderr)
class CFalcon:
"""methods imported from FalcON engine"""
......
py/modules/simulations/cmovie.py
View file @ a1b607eb
......@@ -3,7 +3,13 @@ from __future__ import print_function
from uns_simu import *
from csnapshot import *
from c2dplot import *
import py_unstools # rectify swig
import sys
try:
import py_unstools # rectify swig
except ImportError:
print("WARNING !!!, failed to import module [py_unstools]",file=sys.stderr)
import subprocess
from multiprocessing import Lock,cpu_count
......
py/modules/simulations/crectify.py
View file @ a1b607eb
......@@ -2,8 +2,12 @@
from __future__ import print_function
from uns_simu import *
from csnapshot import *
import sys
import py_unstools # rectify swig
try:
import py_unstools # rectify swig
except ImportError:
print("WARNING !!!, failed to import module [py_unstools]",file=sys.stderr)
from multiprocessing import Lock
import time
......@@ -15,7 +19,7 @@ import glob
#
class CRectify:
"""
compute Center Of Mass on UNS snapshots
Rectify UNS snapshots
"""
__analysis=None
#
......@@ -137,7 +141,7 @@ class CRectify:
#
def smartAnalysis(self,analysis=None):
"""
Main core function to compute RECTIFY on current snapshot store in data_analysis
Main core function to compute RECTIFY on current snapshot stored in data_analysis
"""
if analysis is None:
data=self.__analysis
......
py/modules/simulations/ctree.py
View file @ a1b607eb
from __future__ import print_function
import py_unstools as ut # import py_unstools package
import sys
try:
import py_unstools as ut # import py_unstools package
except ImportError:
print("WARNING !!!, failed to import module [py_unstools]",file=sys.stderr)
import numpy as np
from cfalcon import *
from py_unsio import *
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment